IL_6W2S_049
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_049 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1138
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6W2S|1|A|C|676
6W2S|1|A|G|677
6W2S|1|A|U|678
6W2S|1|A|A|679
6W2S|1|A|G|680
*
6W2S|1|A|U|1025
6W2S|1|A|C|1026
6W2S|1|A|A|1027
6W2S|1|A|A|1028
6W2S|1|A|G|1029
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain M
- uS17
- Chain O
- uS15
- Chain X
- uS8
- Chain Y
- uS12
Coloring options: