IL_6W2S_060
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_060 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.0977
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6W2S|1|A|G|928
6W2S|1|A|G|929
6W2S|1|A|C|930
6W2S|1|A|C|931
*
6W2S|1|A|G|1010
6W2S|1|A|A|1011
6W2S|1|A|A|1012
6W2S|1|A|U|1013
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 2
- Eukaryotic translation initiation factor 3 subunit C
- Chain C
- eS1
- Chain O
- uS15
- Chain c
- eS27
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