IL_6W2S_065

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_065 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.1192

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6W2S|1|A|C|1047
6W2S|1|A|G|1048
6W2S|1|A|A|1049
6W2S|1|A|A|1050
6W2S|1|A|G|1051
*
6W2S|1|A|C|1067
6W2S|1|A|G|1068
6W2S|1|A|U|1069
6W2S|1|A|A|1070
6W2S|1|A|G|1071

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26