IL_6W2S_073
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6W2S|1|A|C|1215, 6W2S|1|A|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_073 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.0977
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6W2S|1|A|A|1214
6W2S|1|A|C|1215
6W2S|1|A|C|1216
6W2S|1|A|A|1217
*
6W2S|1|A|U|1681
6W2S|1|A|C|1682
6W2S|1|A|C|1683
6W2S|1|A|C|1684
6W2S|1|A|U|1685
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain R
- uS9
- Chain V
- uS10
- Chain d
- eS28
Coloring options: