IL_6W2S_085
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6W2S|1|A|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_085 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3418
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6W2S|1|A|C|1395
6W2S|1|A|A|1396
6W2S|1|A|U|1397
6W2S|1|A|G|1398
6W2S|1|A|C|1399
*
6W2S|1|A|G|1447
6W2S|1|A|A|1448
6W2S|1|A|G|1449
6W2S|1|A|G|1450
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain h
- RACK1
Coloring options: