IL_6W2S_089
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 6W2S|1|A|A|1580, 6W2S|1|A|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_089 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2248
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6W2S|1|A|G|1550
6W2S|1|A|U|1551
6W2S|1|A|G|1552
6W2S|1|A|C|1553
6W2S|1|A|C|1554
6W2S|1|A|U|1555
6W2S|1|A|A|1556
6W2S|1|A|C|1557
6W2S|1|A|C|1558
*
6W2S|1|A|G|1577
6W2S|1|A|U|1578
6W2S|1|A|A|1579
6W2S|1|A|A|1580
6W2S|1|A|C|1581
6W2S|1|A|C|1582
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain U
- eS19
- Chain V
- uS10
- Chain e
- eS29
Coloring options: