IL_6W2T_006
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- GCGAAAC*GGAGUAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2T_006 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.1808
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6W2T|1|A|G|594
6W2T|1|A|C|595
6W2T|1|A|G|596
6W2T|1|A|A|597
6W2T|1|A|A|598
6W2T|1|A|A|599
6W2T|1|A|C|600
*
6W2T|1|A|G|682
6W2T|1|A|G|683
6W2T|1|A|A|684
6W2T|1|A|G|685
6W2T|1|A|U|686
6W2T|1|A|A|687
6W2T|1|A|A|688
6W2T|1|A|C|689
Current chains
- Chain A
- CrPV 5'-UTR IRES
Nearby chains
- Chain G
- uS7
- Chain P
- uS11
Coloring options: