IL_6W2T_032

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6W2T|1|a|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_032 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1502

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6W2T|1|a|G|411
6W2T|1|a|G|412
6W2T|1|a|G|413
*
6W2T|1|a|C|424
6W2T|1|a|G|425
6W2T|1|a|A|426
6W2T|1|a|U|427
6W2T|1|a|U|428
6W2T|1|a|C|429

Current chains

Chain a

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Y

uS12