IL_6W2T_045

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6W2T|1|a|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_045 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1383

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6W2T|1|a|G|665
6W2T|1|a|U|666
6W2T|1|a|U|667
6W2T|1|a|A|668
6W2T|1|a|A|669
6W2T|1|a|A|670
6W2T|1|a|A|671
*
6W2T|1|a|U|1161
6W2T|1|a|C|1162

Current chains

Chain a

18S rRNA

Nearby chains

Chain D

uS5

Chain Y

uS12

Chain b

eS26