IL_6W2T_049

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_049 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.3907

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

6W2T|1|a|C|745
6W2T|1|a|U|749
*
6W2T|1|a|A|794
6W2T|1|a|A|795
6W2T|1|a|G|796

Current chains

Chain a

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain M

uS17