IL_6W2T_058
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- CGGCC*GAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2T_058 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3553
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6W2T|1|a|C|927
6W2T|1|a|G|928
6W2T|1|a|G|929
6W2T|1|a|C|930
6W2T|1|a|C|931
*
6W2T|1|a|G|1010
6W2T|1|a|A|1011
6W2T|1|a|A|1012
6W2T|1|a|U|1013
6W2T|1|a|G|1014
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain 2
- Eukaryotic translation initiation factor 3 subunit C
- Chain C
- eS1
- Chain O
- uS15
- Chain c
- eS27
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