IL_6W2T_061
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 6W2T|1|a|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2T_061 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1555
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6W2T|1|a|G|952
6W2T|1|a|C|953
6W2T|1|a|U|954
6W2T|1|a|A|955
6W2T|1|a|G|956
*
6W2T|1|a|C|967
6W2T|1|a|U|968
6W2T|1|a|U|969
6W2T|1|a|G|970
6W2T|1|a|G|971
6W2T|1|a|A|972
6W2T|1|a|C|973
6W2T|1|a|C|974
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain C
- eS1
- Chain P
- uS11
Coloring options: