IL_6W2T_085

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6W2T|1|a|C|1403, 6W2T|1|a|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_085 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1736

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6W2T|1|a|A|1402
6W2T|1|a|C|1403
6W2T|1|a|U|1404
6W2T|1|a|A|1405
*
6W2T|1|a|U|1441
6W2T|1|a|U|1442
6W2T|1|a|C|1443
6W2T|1|a|U|1444

Current chains

Chain a

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain h

RACK1