IL_6W2T_092

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_092 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1005

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6W2T|1|a|G|1702
6W2T|1|a|C|1703
6W2T|1|a|C|1704
6W2T|1|a|C|1705
*
6W2T|1|a|G|1829
6W2T|1|a|U|1830
6W2T|1|a|A|1831
6W2T|1|a|A|1832
6W2T|1|a|C|1833

Current chains

Chain a

18S rRNA

Nearby chains

Chain A

CrPV 5'-UTR IRES