3D structure

PDB id
6W2T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.36 Å

Loop

Sequence
CCU*ACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W2T_099 not in the Motif Atlas
Geometric match to IL_4E48_002
Geometric discrepancy: 0.0897
The information below is about IL_4E48_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

6W2T|1|a|C|1739
6W2T|1|a|C|1740
6W2T|1|a|U|1741
*
6W2T|1|a|A|1793
6W2T|1|a|C|1794
6W2T|1|a|G|1795

Current chains

Chain a
18S rRNA

Nearby chains

Chain H
eS6
Chain J
eS8

Coloring options:


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