IL_6W2T_100

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_100 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1811

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6W2T|1|a|C|1742
6W2T|1|a|G|1743
6W2T|1|a|G|1744
6W2T|1|a|A|1745
6W2T|1|a|U|1746
*
6W2T|1|a|A|1788
6W2T|1|a|G|1789
6W2T|1|a|A|1790
6W2T|1|a|A|1791
6W2T|1|a|G|1792

Current chains

Chain a

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8