IL_6W2T_112

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6W2T|1|a|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_112 not in the Motif Atlas

Homologous match to IL_8CRE_400

Geometric discrepancy: 0.1138

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

6W2T|1|a|G|145
6W2T|1|a|G|146
6W2T|1|a|A|147
6W2T|1|a|U|148
6W2T|1|a|A|149
6W2T|1|a|A|150
6W2T|1|a|C|151
*
6W2T|1|a|G|167
6W2T|1|a|C|168
6W2T|1|a|U|169
6W2T|1|a|A|170
6W2T|1|a|A|171
6W2T|1|a|U|172
6W2T|1|a|A|173
6W2T|1|a|C|174

Current chains

Chain a

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24