IL_6W6L_051

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CCACG*CCGUCG

Length

11 nucleotides

Bulged bases

6W6L|1|t|U|1192

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_051 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3435

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6W6L|1|t|C|1068
6W6L|1|t|C|1069
6W6L|1|t|A|1070
6W6L|1|t|C|1071
6W6L|1|t|G|1072
*
6W6L|1|t|C|1189
6W6L|1|t|C|1190
6W6L|1|t|G|1191
6W6L|1|t|U|1192
6W6L|1|t|C|1193
6W6L|1|t|G|1194

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L7

Chain U

60S ribosomal protein L21