IL_6W6L_053

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_053 not in the Motif Atlas

Geometric match to IL_5UNE_003

Geometric discrepancy: 0.1445

The information below is about IL_5UNE_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6W6L|1|t|G|1077
6W6L|1|t|A|1078
6W6L|1|t|C|1079
*
6W6L|1|t|G|1182
6W6L|1|t|G|1183
6W6L|1|t|U|1184

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L18a

Chain U

60S ribosomal protein L21