IL_6W6L_057

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGAUC*GGGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_057 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3031

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6W6L|1|t|G|1408
6W6L|1|t|G|1409
6W6L|1|t|A|1410
6W6L|1|t|U|1411
6W6L|1|t|C|1412
*
6W6L|1|t|G|1437
6W6L|1|t|G|1438
6W6L|1|t|G|1439
6W6L|1|t|C|1440
6W6L|1|t|A|1441
6W6L|1|t|C|1442

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L18

Chain c

60S ribosomal protein L29