IL_6W6L_064

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_064 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1204

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6W6L|1|t|C|1533
6W6L|1|t|G|1534
6W6L|1|t|A|1535
6W6L|1|t|A|1536
6W6L|1|t|G|1537
*
6W6L|1|t|U|1554
6W6L|1|t|G|1555
6W6L|1|t|G|1556
6W6L|1|t|A|1557
6W6L|1|t|G|1558

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain S

60S ribosomal protein L19

Chain q

60S ribosomal protein L37a