IL_6W6L_087
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6W6L|1|t|C|1916, 6W6L|1|t|A|2022
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W6L_087 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.147
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6W6L|1|t|G|1914
6W6L|1|t|A|1915
6W6L|1|t|C|1916
6W6L|1|t|C|1917
6W6L|1|t|C|1918
6W6L|1|t|C|1919
6W6L|1|t|A|1920
6W6L|1|t|G|1921
6W6L|1|t|A|1922
6W6L|1|t|A|1923
6W6L|1|t|A|1924
6W6L|1|t|A|1925
*
6W6L|1|t|U|2019
6W6L|1|t|G|2020
6W6L|1|t|A|2021
6W6L|1|t|A|2022
6W6L|1|t|A|2023
6W6L|1|t|A|2024
6W6L|1|t|U|2025
6W6L|1|t|G|2026
6W6L|1|t|G|2027
6W6L|1|t|A|2028
6W6L|1|t|U|2029
6W6L|1|t|G|2030
6W6L|1|t|G|2031
6W6L|1|t|C|2032
6W6L|1|t|G|2033
6W6L|1|t|C|2034
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 60S ribosomal protein L10
- Chain P
- 60S ribosomal protein L13a
- Chain g
- 60S ribosomal protein L35a
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