IL_6W6L_097
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6W6L|1|t|A|2491, 6W6L|1|t|A|2492
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W6L_097 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0874
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6W6L|1|t|C|2425
6W6L|1|t|U|2426
6W6L|1|t|G|2427
6W6L|1|t|A|2428
6W6L|1|t|G|2429
*
6W6L|1|t|C|2488
6W6L|1|t|G|2489
6W6L|1|t|A|2490
6W6L|1|t|A|2491
6W6L|1|t|A|2492
6W6L|1|t|G|2493
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain h
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
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