IL_6W6L_100
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- GAGUGG*CGC
- Length
- 9 nucleotides
- Bulged bases
- 6W6L|1|t|G|2523, 6W6L|1|t|U|2524, 6W6L|1|t|G|2525
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W6L_100 not in the Motif Atlas
- Geometric match to IL_5J7L_009
- Geometric discrepancy: 0.2617
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6W6L|1|t|G|2521
6W6L|1|t|A|2522
6W6L|1|t|G|2523
6W6L|1|t|U|2524
6W6L|1|t|G|2525
6W6L|1|t|G|2526
*
6W6L|1|t|C|2751
6W6L|1|t|G|2752
6W6L|1|t|C|2753
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- 60S ribosomal protein L38
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