IL_6W6L_102

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_102 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1957

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6W6L|1|t|C|2568
6W6L|1|t|G|2569
6W6L|1|t|A|2570
6W6L|1|t|U|2571
6W6L|1|t|C|2572
*
6W6L|1|t|G|2731
6W6L|1|t|G|2732
6W6L|1|t|G|2733
6W6L|1|t|A|2734
6W6L|1|t|G|2735

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain a

60S ribosomal protein L27

Chain h

60S ribosomal protein L34