IL_6W6L_113

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6W6L|1|t|U|2859

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_113 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.096

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6W6L|1|t|C|2846
6W6L|1|t|G|2847
6W6L|1|t|U|2848
6W6L|1|t|A|2849
6W6L|1|t|A|2850
6W6L|1|t|C|2851
*
6W6L|1|t|G|2856
6W6L|1|t|G|2857
6W6L|1|t|A|2858
6W6L|1|t|U|2859
6W6L|1|t|A|2860
6W6L|1|t|A|2861
6W6L|1|t|G|2862

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain o

60S ribosomal protein L41

Chain q

60S ribosomal protein L37a