IL_6W6L_121

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6W6L|1|t|A|3756, 6W6L|1|t|C|3762, 6W6L|1|t|C|3781

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_121 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.1802

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6W6L|1|t|C|3752
6W6L|1|t|C|3753
6W6L|1|t|A|3754
6W6L|1|t|A|3755
6W6L|1|t|A|3756
6W6L|1|t|U|3757
6W6L|1|t|G|3758
6W6L|1|t|C|3759
6W6L|1|t|C|3760
6W6L|1|t|U|3761
6W6L|1|t|C|3762
6W6L|1|t|G|3763
*
6W6L|1|t|C|3779
6W6L|1|t|G|3780
6W6L|1|t|C|3781
6W6L|1|t|G|3782

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain o

60S ribosomal protein L41