3D structure

PDB id
6W6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human ribosome-TMCO1 translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.84 Å

Loop

Sequence
GCGG*UAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W6L_122 not in the Motif Atlas
Homologous match to IL_8C3A_096
Geometric discrepancy: 0.0842
The information below is about IL_8C3A_096
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_63450.5
Basepair signature
cWW-cHS-cWW-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6W6L|1|t|G|3866
6W6L|1|t|C|3867
6W6L|1|t|G|3868
6W6L|1|t|G|3869
*
6W6L|1|t|U|4525
6W6L|1|t|A|4526
6W6L|1|t|C|4527

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain P
60S ribosomal protein L13a

Coloring options:


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