IL_6W6L_147

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_147 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2595

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6W6L|1|t|U|4594
6W6L|1|t|G|4595
6W6L|1|t|U|4596
6W6L|1|t|A|4597
6W6L|1|t|U|4598
6W6L|1|t|G|4599
*
6W6L|1|t|C|4624
6W6L|1|t|G|4625
6W6L|1|t|A|4626
6W6L|1|t|A|4627
6W6L|1|t|G|4628

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain X

60S ribosomal protein L24

Chain e

60S ribosomal protein L31