IL_6W6L_148

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_148 not in the Motif Atlas

Geometric match to IL_4V88_395

Geometric discrepancy: 0.1504

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6W6L|1|t|U|4600
6W6L|1|t|G|4601
6W6L|1|t|C|4602
*
6W6L|1|t|G|4621
6W6L|1|t|G|4622
6W6L|1|t|G|4623

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain X

60S ribosomal protein L24

Chain e

60S ribosomal protein L31