IL_6W6L_175

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_175 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0807

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6W6L|1|t|G|2826
6W6L|1|t|G|2827
6W6L|1|t|A|2828
6W6L|1|t|A|2829
6W6L|1|t|G|2830
6W6L|1|t|U|2831
6W6L|1|t|C|2832
6W6L|1|t|G|2833
6W6L|1|t|G|2834
*
6W6L|1|t|C|3808
6W6L|1|t|U|3809
6W6L|1|t|G|3810
6W6L|1|t|U|3811
6W6L|1|t|C|3812

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

60S ribosomal protein L23