IL_6W6L_179

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6W6L|1|t|U|4399

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_179 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.2187

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6W6L|1|t|G|4367
6W6L|1|t|U|4368
6W6L|1|t|G|4369
*
6W6L|1|t|U|4397
6W6L|1|t|U|4398
6W6L|1|t|U|4399
6W6L|1|t|U|4400
6W6L|1|t|U|4401

Current chains

Chain t

28S ribosomal RNA

Nearby chains