IL_6W6P_020

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6W6P|1|A|G|841, 6W6P|1|A|G|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_020 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1239

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

6W6P|1|A|G|714
6W6P|1|A|A|715
6W6P|1|A|A|716
6W6P|1|A|A|717
6W6P|1|A|C|718
*
6W6P|1|A|G|839
6W6P|1|A|A|840
6W6P|1|A|G|841
6W6P|1|A|A|842
6W6P|1|A|U|843
6W6P|1|A|A|844
6W6P|1|A|G|845
6W6P|1|A|C|846

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15