IL_6W6P_026

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CAAAC

Length

8 nucleotides

Bulged bases

6W6P|1|A|C|816, 6W6P|1|A|A|828, 6W6P|1|A|A|829, 6W6P|1|A|A|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_026 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0881

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6W6P|1|A|G|815
6W6P|1|A|C|816
6W6P|1|A|G|817
*
6W6P|1|A|C|827
6W6P|1|A|A|828
6W6P|1|A|A|829
6W6P|1|A|A|830
6W6P|1|A|C|831

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain T

50S ribosomal protein L22