IL_6W6P_044

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6W6P|1|A|U|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_044 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1133

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6W6P|1|A|C|1245
6W6P|1|A|G|1246
6W6P|1|A|U|1247
6W6P|1|A|U|1248
6W6P|1|A|G|1249
6W6P|1|A|A|1250
6W6P|1|A|A|1251
6W6P|1|A|G|1252
*
6W6P|1|A|U|1271
6W6P|1|A|G|1272
6W6P|1|A|G|1273
6W6P|1|A|A|1274
6W6P|1|A|G|1275

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20