IL_6W6P_055

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_055 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2132

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

6W6P|1|A|U|1518
6W6P|1|A|G|1519
6W6P|1|A|A|1520
6W6P|1|A|G|1521
*
6W6P|1|A|C|1557
6W6P|1|A|A|1558
6W6P|1|A|A|1559
6W6P|1|A|G|1560

Current chains

Chain A

23S rRNA

Nearby chains