IL_6W6P_157

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_157 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1214

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6W6P|1|a|C|1318
6W6P|1|a|G|1319
6W6P|1|a|G|1320
6W6P|1|a|A|1321
6W6P|1|a|U|1322
6W6P|1|a|U|1323
*
6W6P|1|a|A|1344
6W6P|1|a|U|1345
6W6P|1|a|G|1346
6W6P|1|a|A|1347
6W6P|1|a|A|1348
6W6P|1|a|G|1349

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13