IL_6WD3_109

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD3_109 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.0941

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6WD3|1|2|C|71
6WD3|1|2|G|72
6WD3|1|2|A|73
6WD3|1|2|U|74
6WD3|1|2|G|75
6WD3|1|2|G|76
6WD3|1|2|U|77
6WD3|1|2|A|78
6WD3|1|2|G|79
*
6WD3|1|2|C|97
6WD3|1|2|G|98
6WD3|1|2|A|99
6WD3|1|2|G|100
6WD3|1|2|A|101
6WD3|1|2|G|102
6WD3|1|2|U|103
6WD3|1|2|A|104
6WD3|1|2|G|105

Current chains

Chain 2

5S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

50S ribosomal protein L16

Chain v

50S ribosomal protein L25