IL_6WD4_067

3D structure

PDB id

6WD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6WD4|1|1|A|1801, 6WD4|1|1|C|1816, 6WD4|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD4_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1002

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6WD4|1|1|U|1798
6WD4|1|1|G|1799
6WD4|1|1|C|1800
6WD4|1|1|A|1801
6WD4|1|1|A|1802
6WD4|1|1|A|1803
6WD4|1|1|C|1804
*
6WD4|1|1|G|1813
6WD4|1|1|G|1814
6WD4|1|1|A|1815
6WD4|1|1|C|1816
6WD4|1|1|G|1817
6WD4|1|1|U|1818
6WD4|1|1|A|1819
6WD4|1|1|U|1820
6WD4|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2