IL_6WD8_181

3D structure

PDB id

6WD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD8_181 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2761

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WD8|1|1|U|1720
6WD8|1|1|G|1721
6WD8|1|1|A|1722
6WD8|1|1|G|1723
6WD8|1|1|G|1724
6WD8|1|1|U|1725
*
6WD8|1|1|A|1735
6WD8|1|1|U|1736
6WD8|1|1|G|1737
6WD8|1|1|G|1738
6WD8|1|1|A|1739
6WD8|1|1|G|1740

Current chains

Chain 1

23S ribosomal RNA

Nearby chains