IL_6WDA_139

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

6WDA|1|3|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDA_139 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.1597

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6WDA|1|3|U|605
6WDA|1|3|G|606
6WDA|1|3|A|607
6WDA|1|3|A|608
6WDA|1|3|A|609
6WDA|1|3|U|610
6WDA|1|3|C|611
6WDA|1|3|C|612
*
6WDA|1|3|G|628
6WDA|1|3|A|629
6WDA|1|3|A|630
6WDA|1|3|C|631
6WDA|1|3|U|632
6WDA|1|3|G|633

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain M

30S ribosomal protein S8

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17