IL_6WDB_030

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

6WDB|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDB_030 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2869

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6WDB|1|1|G|880
6WDB|1|1|G|881
6WDB|1|1|G|882
6WDB|1|1|G|883
*
6WDB|1|1|C|893
6WDB|1|1|U|894
6WDB|1|1|U|895
6WDB|1|1|A|896
6WDB|1|1|C|897

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA