3D structure

PDB id
6WDB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6WDB|1|1|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDB_178 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.2148
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6WDB|1|1|C|1043
6WDB|1|1|C|1044
6WDB|1|1|C|1045
6WDB|1|1|A|1046
6WDB|1|1|G|1047
6WDB|1|1|A|1048
6WDB|1|1|C|1049
6WDB|1|1|A|1050
6WDB|1|1|G|1051
*
6WDB|1|1|U|1108
6WDB|1|1|C|1109
6WDB|1|1|G|1110
6WDB|1|1|A|1111
6WDB|1|1|G|1112

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain f
50S ribosomal protein L6
Chain h
50S ribosomal protein L10

Coloring options:


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