IL_6WDC_023

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases (A, C, G, U)

846U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDC_023 not in the Motif Atlas

Homologous match to IL_5J7L_267

Geometric discrepancy: 0.2107

The information below is about IL_5J7L_267

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_92001.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

6WDC|1|1|A|844
6WDC|1|1|A|845
6WDC|1|1|U|846
6WDC|1|1|U|847
*
6WDC|1|1|A|933
6WDC|1|1|U|934

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain z

50S ribosomal protein L30