IL_6WDC_034

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDC_034 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1421

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.8

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6WDC|1|1|U|1004
6WDC|1|1|C|1005
6WDC|1|1|C|1006
6WDC|1|1|C|1007
6WDC|1|1|A|1008
6WDC|1|1|A|1009
6WDC|1|1|A|1010
6WDC|1|1|G|1011
*
6WDC|1|1|C|1150
6WDC|1|1|A|1151

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20