3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CGUAAAG*CG
Length
9 nucleotides
Bulged bases
6WDC|1|3|A|572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDC_135 not in the Motif Atlas
Homologous match to IL_6CZR_134
Geometric discrepancy: 0.1495
The information below is about IL_6CZR_134
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.5
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
5

Unit IDs

6WDC|1|3|C|569
6WDC|1|3|G|570
6WDC|1|3|U|571
6WDC|1|3|A|572
6WDC|1|3|A|573
6WDC|1|3|A|574
6WDC|1|3|G|575
*
6WDC|1|3|C|880
6WDC|1|3|G|881

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Q
30S ribosomal protein S12
Chain V
30S ribosomal protein S17

Coloring options:


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