3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDC_143 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.1503
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

6WDC|1|3|A|673
6WDC|1|3|G|674
6WDC|1|3|A|675
6WDC|1|3|A|676
6WDC|1|3|U|677
6WDC|1|3|U|678
*
6WDC|1|3|A|712
6WDC|1|3|G|713
6WDC|1|3|G|714
6WDC|1|3|A|715
6WDC|1|3|A|716
6WDC|1|3|U|717

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S6
Chain P
30S ribosomal protein S11
Chain W
30S ribosomal protein S18
Chain Z
30S ribosomal protein S21
Chain b
50S ribosomal protein L2

Coloring options:


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