3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDC_180 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.1529
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6WDC|1|1|U|1851
6WDC|1|1|U|1852
6WDC|1|1|A|1853
6WDC|1|1|A|1854
6WDC|1|1|U|1855
6WDC|1|1|U|1856
6WDC|1|1|G|1857
6WDC|1|1|A|1858
6WDC|1|1|U|1859
6WDC|1|1|G|1860
*
6WDC|1|1|U|1882
6WDC|1|1|U|1883
6WDC|1|1|G|1884
6WDC|1|1|A|1885
6WDC|1|1|U|1886
6WDC|1|1|C|1887
6WDC|1|1|G|1888
6WDC|1|1|A|1889
6WDC|1|1|A|1890
6WDC|1|1|G|1891

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain a
50S ribosomal protein L1

Coloring options:


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