IL_6WDC_185

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDC_185 not in the Motif Atlas

Geometric match to IL_8C3A_096

Geometric discrepancy: 0.2689

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WDC|1|3|U|593
6WDC|1|3|U|594
6WDC|1|3|A|595
6WDC|1|3|A|596
*
6WDC|1|3|U|644
6WDC|1|3|G|645
6WDC|1|3|G|646

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain V

30S ribosomal protein S17