3D structure

PDB id
6WDG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
6WDG|1|1|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDG_033 not in the Motif Atlas
Homologous match to IL_7A0S_033
Geometric discrepancy: 0.0797
The information below is about IL_7A0S_033
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6WDG|1|1|C|998
6WDG|1|1|U|999
6WDG|1|1|A|1000
6WDG|1|1|A|1001
6WDG|1|1|G|1002
*
6WDG|1|1|C|1153
6WDG|1|1|G|1154
6WDG|1|1|A|1155
6WDG|1|1|A|1156
6WDG|1|1|G|1157

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain z
50S ribosomal protein L30

Coloring options:


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